##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane2_Index7_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	22985984	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	31.942289440382453	33.0	31.0	34.0	30.0	34.0
2	32.0258930398629	34.0	31.0	34.0	30.0	34.0
3	32.072314241583044	34.0	31.0	34.0	30.0	34.0
4	35.52678623634298	37.0	35.0	37.0	33.0	37.0
5	35.52412387479257	37.0	35.0	37.0	33.0	37.0
6	35.5232997638909	37.0	35.0	37.0	33.0	37.0
7	35.43656134103286	37.0	35.0	37.0	33.0	37.0
8	35.43392538687924	37.0	35.0	37.0	33.0	37.0
9	36.96202033378253	39.0	37.0	39.0	33.0	39.0
10-14	37.35660083988573	39.2	37.2	39.4	33.0	39.4
15-19	38.4124988166702	40.0	38.0	41.0	33.2	41.0
20-24	38.231665270453504	40.0	38.0	41.0	33.2	41.0
25-29	38.13856991286516	40.0	38.0	41.0	33.0	41.0
30-34	38.039696895290625	40.0	38.0	41.0	33.0	41.0
35-39	37.81345324176681	40.0	37.0	41.0	32.6	41.0
40-44	37.44118480200804	39.6	36.4	41.0	31.4	41.0
45-49	37.016156323784095	39.0	35.4	41.0	31.0	41.0
50-54	36.200285843755914	38.2	34.6	40.0	29.8	40.6
55-59	36.07648782840882	38.0	34.6	40.0	29.4	41.0
60-64	35.56165009076836	37.0	34.0	40.0	28.8	41.0
65-69	35.06872079959683	36.0	34.0	39.4	29.0	41.0
70-74	34.261363733656125	35.0	33.8	38.2	28.4	40.4
75-79	33.388084295194844	35.0	33.0	36.6	27.2	39.0
80-84	32.561608152167864	35.0	33.0	35.6	26.2	37.2
85-89	31.708003712175213	35.0	32.2	35.0	25.0	36.2
90	31.206942761293142	35.0	32.0	35.0	24.0	36.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
10	168.0
11	1900.0
12	5640.0
13	11301.0
14	18539.0
15	25972.0
16	32365.0
17	38415.0
18	44800.0
19	52438.0
20	63058.0
21	75186.0
22	88531.0
23	107025.0
24	132007.0
25	162574.0
26	201804.0
27	250103.0
28	306174.0
29	373516.0
30	461962.0
31	576297.0
32	732934.0
33	951849.0
34	1294813.0
35	1860938.0
36	2871862.0
37	4271091.0
38	4899204.0
39	2975634.0
40	97884.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	23.365544420015	11.87918900840845	9.92370392445266	54.83156264712389
2	20.961380287506994	18.715179576762246	36.727654584191995	23.59578555153876
3	25.48457816617121	21.123746593308248	22.365300840074077	31.026374400446464
4	27.67754412090638	27.109390890112255	19.016029593417784	26.197035395563578
5	29.327461779249255	29.619161004878446	21.620174685422082	19.433202530450217
6	24.49043351871634	32.41266766052039	21.913585627145874	21.183313193617394
7	21.626382041873928	18.710494364181272	37.359249505682904	22.30387408826189
8	21.504347889798915	22.115509581546462	29.317439654897203	27.062702873757416
9	21.624258524666192	21.01021343082636	31.657314340541532	25.708213703965914
10-14	24.52883810610846	26.13934477369955	24.643493100629776	24.688324019562216
15-19	24.90694998639836	25.099043033561667	25.05720302903816	24.936803951001806
20-24	24.67437796296855	25.349426923280138	25.445129488711533	24.53106562503978
25-29	24.498339312579816	25.392986270545233	25.40455844411147	24.704115972763482
30-34	24.568196145476133	25.309743233061422	25.311054519941052	24.811006101521397
35-39	24.565187940889	25.47989438568431	25.29216280857417	24.66275486485252
40-44	24.517144516967175	25.305851582579937	25.449693492957	24.727310407495896
45-49	24.467040660762894	25.365008684264183	25.354333050668636	24.81361760430428
50-54	24.501550404123158	25.446537706341672	25.402024770789488	24.649887118745685
55-59	24.510054878489683	25.390592335980365	25.3490347297507	24.750318055779253
60-64	24.415054816294703	25.39817521191256	25.472880938138236	24.7138890336545
65-69	24.444663817351955	25.521165637605662	25.45985443887301	24.574316106169373
70-74	24.490299917486983	25.46063358498388	25.36156262559847	24.687503871930662
75-79	24.48154321289449	25.394116952158814	25.443844707230408	24.680495127716288
80-84	24.416120739833588	25.536571039576167	25.472990190262674	24.57431803032757
85-89	24.52009211046183	25.507968042905716	25.379680004443824	24.592259842188632
90	24.275930844439582	25.571078155514698	25.596490006086054	24.55650099395967
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	78.19710706713889
2	44.55716583904575
3	56.510952566617675
4	53.87457951646996
5	48.76066430969947
6	45.67374671233374
7	43.93025613013582
8	48.56705076355634
9	47.332472228632106
10-14	49.217162125670676
15-19	49.843753937400166
20-24	49.20544358800833
25-29	49.20245528534329
30-34	49.37920224699753
35-39	49.22794280574152
40-44	49.24445492446307
45-49	49.280658265067174
50-54	49.15143752286884
55-59	49.260372934268936
60-64	49.1289438499492
65-69	49.01897992352133
70-74	49.177803789417645
75-79	49.16203834061078
80-84	48.99043877016116
85-89	49.112351952650464
90	48.832431838399245
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	11.0
1	14.0
2	15.5
3	22.0
4	33.0
5	46.5
6	67.0
7	97.5
8	124.0
9	159.0
10	188.0
11	212.0
12	297.0
13	466.5
14	658.5
15	933.0
16	1476.0
17	2407.5
18	3929.5
19	6712.5
20	8553.0
21	11470.5
22	18970.5
23	30365.5
24	45939.5
25	67114.5
26	94463.0
27	129114.0
28	166998.0
29	207072.0
30	228978.0
31	252029.0
32	297908.5
33	348055.5
34	403971.0
35	457294.0
36	513263.0
37	576487.5
38	629725.0
39	674521.0
40	698061.0
41	713486.5
42	744575.5
43	772757.5
44	791100.0
45	799449.0
46	797488.0
47	790518.5
48	789491.5
49	789502.5
50	788057.0
51	779969.0
52	770527.5
53	757947.5
54	749846.0
55	749943.5
56	737293.0
57	720371.0
58	698981.5
59	669526.5
60	654162.0
61	636191.0
62	598111.5
63	551346.0
64	495001.5
65	438796.5
66	381346.5
67	320580.5
68	266591.0
69	215225.0
70	188015.0
71	165253.5
72	123473.5
73	88771.5
74	59848.0
75	37082.0
76	21484.5
77	11459.5
78	5440.5
79	2396.0
80	1417.0
81	1050.5
82	509.5
83	266.5
84	158.5
85	114.0
86	83.0
87	46.0
88	34.0
89	30.0
90	27.0
91	23.0
92	17.0
93	13.0
94	8.5
95	7.5
96	6.0
97	2.5
98	1.5
99	1.0
100	1.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.2931090528906659
2	0.2226052189020927
3	0.2808363566249763
4	0.3036937639911348
5	0.25941460674470146
6	0.17234850594170778
7	0.22103469662208067
8	0.24667205893817729
9	0.2290613271113388
10-14	0.20405826437536892
15-19	0.178185976288855
20-24	0.2044550278987404
25-29	0.036765883070309285
30-34	0.0040450737284077115
35-39	0.004983036619184978
40-44	0.009310891367539454
45-49	0.012202218534564368
50-54	0.007195689338337658
55-59	0.004446187729009121
60-64	0.010751769426098965
65-69	0.005551208945416476
70-74	1.5313679849424762E-4
75-79	1.2094326699261603E-4
80-84	0.003310713171992115
85-89	0.0015870540934858391
90	0.0028060578133178894
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.2985984E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	55.66355176126749
#Duplication Level	Relative count
1	100.0
2	32.11722358349416
3	17.222499295270726
4	10.847409848862675
5	7.483140707331353
6	5.653012988702647
7	4.366068911681158
8	3.5203937810351933
9	2.89264262636338
10++	32.737385345967866
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4825570	2.590507	5.6000633	1
GAAGA	4873230	2.588489	5.0373735	2
CCTGG	4785750	2.548886	6.2052684	1
CTTCT	5100305	2.5329044	6.1620927	1
CTGGA	4642755	2.459647	9.696913	1
TCCAG	4571145	2.3695848	6.0343475	2
CTGCT	4563155	2.3468037	5.4902086	1
CTCCT	4562440	2.2959313	8.456118	1
CTGGG	4177025	2.2736166	9.198201	1
CAGGA	4218895	2.252846	5.679981	1
CTTCA	4432635	2.2188115	6.2878327	1
CTCCA	4303455	2.182804	8.8802395	1
CCCAG	4128250	2.1684647	7.719692	1
CAGAA	4064390	2.1123943	5.247678	1
CTCTG	3936925	2.0247371	6.8424253	1
CTGCA	3844455	1.9928842	5.1835246	1
CTTCC	3887775	1.9564236	5.1089773	1
CTGGC	3534310	1.88237	5.924097	1
TGGAA	3562705	1.8774723	5.435953	2
CTGAA	3610485	1.861699	6.1007514	1
CTTTT	3710815	1.8186656	5.250293	1
CTCAG	3356325	1.7398479	6.700403	1
CTGAG	3282980	1.739263	5.3585076	1
CTTTG	3361975	1.7063454	5.508469	1
CTGGT	3169595	1.6659619	5.5939894	1
CTTGG	3122450	1.6411821	5.795134	1
CTCCC	3015620	1.5377207	5.5531554	1
>>END_MODULE
